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Bibliography

2015

Schumacher FR, Schmit SL, Jiao S, Edlund CK, Wang H, Zhang B, Hsu L, Huang S-C, Fischer CP, Harju JF, Idos GE, Lejbkowicz F, Manion FJ, McDonnell K, McNeil CE, Melas M, Rennert HS, Shi W, Thomas DC, Van Den Berg DJ, Hutter CM, Aragaki AK, Butterbach K, Caan BJ, Carlson CS, Chanock SJ, Curtis KR, Fuchs CS, Gala M, Giocannucci EL, Gogarten SM, Hayes RB, Henderson B, Hunter DJ, Jackson RD, Kolonel LN, Kooperberg C, Kury S, LaCroix A, Laurie CC, Laurie CA, Lemire M, Levine D, Ma J, Makar KW, Qu C, Taverna D, Ulrich CM, Wu K, Kono S, West DW, Berndt SI, Bézieau S, Brenner H, Campbell PT, Chan AT, Chang-Claude J, Coetzee GA, Conti DV, Duggan D, Figueiredo JC, Fortini BK, Gallinger SJ, W Gauderman J, Giles G, Green R, Haile R, Harrison TA, Hoffmeister M, Hopper JL, Hudson TJ, Jacobs E, Iwasaki M, Jee SHa, Jenkins M, Jia W-H, Joshi A, Li L, Lindor NM, Matsuo K, Moreno V, Mukherjee B, Newcomb PA, Potter JD, Raskin L, Rennert G, Rosse S, Severi G, Schoen RE, Seminara D, Shu X-O, Slattery ML, Tsugane S, White E, Xiang Y-B, Zanke BW, Zheng W, Le Marchand L, et al. Genome-wide association study of colorectal cancer identifies six new susceptibility loci. Nat Commun 2015;6:7138. doi:10.1038/ncomms8138.

2014

Hanauer DA, Zheng K, Singer DC, Gebremariam A, Davis MM. Public awareness, perception, and use of online physician rating sites. JAMA 2014;311(7):734-5. doi:10.1001/jama.2013.283194.
CCI Members: David Hanauer
King EA, Hanauer DA, Choi SWon, Jong N, Hamstra DA, Li Y, Farley FA, Caird MS. Osteochondromas after radiation for pediatric malignancies: a role for expanded counseling for skeletal side effects. J Pediatr Orthop 2014;34(3):331-5. doi:10.1097/BPO.0000000000000081.
CCI Members: David Hanauer
Gleimer M, Li Y, Chang L, Paczesny S, Hanauer DA, Frame DG, Byersdorfer CA, Reddy PR, Braun TM, Choi SW. Baseline body mass index among children and adults undergoing allogeneic hematopoietic cell transplantation: clinical characteristics and outcomes. Bone Marrow Transplant 2014. doi:10.1038/bmt.2014.280.
CCI Members: David Hanauer
Wang H, Burnett T, Kono S, Haiman CA, Iwasaki M, Wilkens LR, Loo LWM, Van Den Berg D, Kolonel LN, Henderson BE, Keku TO, Sandler RS, Signorello LB, Blot WJ, Newcomb PA, Pande M, Amos CI, West DW, Bézieau S, Berndt SI, Zanke BW, Hsu L, Lindor NM, Haile RW, Hopper JL, Jenkins MA, Gallinger S, Casey G, Stenzel SL, Schumacher FR, Peters U, Gruber SB, Tsugane S, Stram DO, Le Marchand L. Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A. Nat Commun 2014;5:4613. doi:10.1038/ncomms5613.
CCI Members: Frank Manion
Papagerakis S, Bellile E, Peterson LA, Pliakas M, Balaskas K, Selman S, Hanauer DA, Taylor JMG, Duffy S, Wolf G. Proton pump inhibitors and histamine 2 blockers are associated with improved overall survival in patients with head and neck squamous carcinoma. Cancer Prev Res (Phila) 2014;7(12):1258-69. doi:10.1158/1940-6207.CAPR-14-0002.
CCI Members: David Hanauer
Manion FJ, He Y, Eisenhauer E, Lin Y, Karnovsky A, Harris MR. Towards a Common Semantic Representation of Informed Consent for Biobank Specimens. In: International Conference On Biomedical Ontology.Vol 1309. International Conference on Biomedical Ontology. CEUR Workshop Proceedings; 2014:61 - 63. Available at: http://ceur-ws.org/Vol-1309/paper7.pdf.
CCI Members: Frank Manion
Zhang B, Jia W-H, Matsuda K, Kweon S-S, Matsuo K, Xiang Y-B, Shin A, Jee SHa, Kim D-H, Cai Q, Long J, Shi J, Wen W, Yang G, Zhang Y, Li C, Li B, Guo Y, Ren Z, Ji B-T, Pan Z-Z, Takahashi A, Shin M-H, Matsuda F, Gao Y-T, Oh JHwan, Kim S, Ahn Y-O, Chan AT, Chang-Claude J, Slattery ML, Gruber SB, Schumacher FR, Stenzel SL, Casey G, Kim H-R, Jeong J-Y, Park JWon, Li H-L, Hosono S, Cho S-H, Kubo M, Shu X-O, Zeng Y-X, Zheng W. Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk. Nat Genet 2014;46(6):533-42. doi:10.1038/ng.2985.
CCI Members: Frank Manion
Huang Y, Hanauer DA. Patient no-show predictive model development using multiple data sources for an effective overbooking approach. Appl Clin Inform 2014;5(3):836-60. doi:10.4338/ACI-2014-04-RA-0026.
CCI Members: David Hanauer
Hanauer DA, Gardner M, Sandberg DE. Unbiased identification of patients with disorders of sex development. PLoS One 2014;9(9):e108702. doi:10.1371/journal.pone.0108702.
CCI Members: David Hanauer
Hanauer DA, Zheng K, Singer DC, Gebremariam A, Davis MM. Parental awareness and use of online physician rating sites. Pediatrics 2014;134(4):e966-75. doi:10.1542/peds.2014-0681.
CCI Members: David Hanauer
Hanauer DA, Saeed M, Zheng K, Mei Q, Shedden K, Aronson AR, Ramakrishnan N. Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis. J Am Med Inform Assoc 2014;21(5):925-37. doi:10.1136/amiajnl-2014-002767.
CCI Members: David Hanauer
Chang L, Frame D, Braun T, Gatza E, Hanauer DA, Zhao S, Magenau JM, Schultz K, Tokala H, Ferrara JLM, Levine JE, Reddy P, Paczesny S, Choi SWon. Engraftment syndrome after allogeneic hematopoietic cell transplantation predicts poor outcomes. Biol Blood Marrow Transplant 2014;20(9):1407-17. doi:10.1016/j.bbmt.2014.05.022.
CCI Members: David Hanauer
Munson ME, Wrobel JS, Holmes CM, Hanauer DA. Data mining for identifying novel associations and temporal relationships with Charcot foot. J Diabetes Res 2014;2014:214353. doi:10.1155/2014/214353.
CCI Members: David Hanauer
Hanauer DA, Preib R, Zheng K, Choi SW. Patient-initiated electronic health record amendment requests. J Am Med Inform Assoc 2014;21(6):992-1000. doi:10.1136/amiajnl-2013-002574.
CCI Members: David Hanauer

2013

Yoon EY, Kopec K, McCool B, Freed G, Rocchini A, Kershaw D, Hanauer DA, Clark S. Differences in Blood Pressure Monitoring for Children and Adolescents With Hypertension Among Pediatric Cardiologists and Pediatric Nephrologists. Clin Pediatr (Phila) 2013;53(10):1008-1012. doi:10.1177/0009922813512176.
CCI Members: David Hanauer
Hanauer DA, Zheng K, Commiskey EL, Duck MG, Choi SW, Blayney DW. Computerized prescriber order entry implementation in a physician assistant-managed hematology and oncology inpatient service: effects on workflow and task switching. J Oncol Pract 2013;9(4):e103-14. doi:10.1200/JOP.2012.000655.
CCI Members: David Hanauer
Hanauer DA, Ramakrishnan N, Seyfried LS. Describing the relationship between cat bites and human depression using data from an electronic health record. PLoS One 2013;8(8):e70585. doi:10.1371/journal.pone.0070585.
CCI Members: David Hanauer
T Y Wu D, Hanauer DA, Mei Q, Clark PM, An LC, Lei J, Proulx J, Zeng-Treitler Q, Zheng K. Applying multiple methods to assess the readability of a large corpus of medical documents. Stud Health Technol Inform 2013;192:647-51.
CCI Members: David Hanauer
Hanauer DA, Aberdeen J, Bayer S, Wellner B, Clark C, Zheng K, Hirschman L. Bootstrapping a de-identification system for narrative patient records: cost-performance tradeoffs. Int J Med Inform 2013;82(9):821-31. doi:10.1016/j.ijmedinf.2013.03.005.
CCI Members: David Hanauer
Ozkaynak M, Brennan PFlatley, Hanauer DA, Johnson S, Aarts J, Zheng K, Haque SN. Patient-centered care requires a patient-oriented workflow model. J Am Med Inform Assoc 2013;20(e1):e14-6. doi:10.1136/amiajnl-2013-001633.
CCI Members: David Hanauer
Harder EE, Gaies MG, Yu S, Donohue JE, Hanauer DA, Goldberg CS, Hirsch JC. Risk factors for surgical site infection in pediatric cardiac surgery patients undergoing delayed sternal closure. J Thorac Cardiovasc Surg 2013;146(2):326-33. doi:10.1016/j.jtcvs.2012.09.062.
CCI Members: David Hanauer
Hanauer DA, Ramakrishnan N. Modeling temporal relationships in large scale clinical associations. J Am Med Inform Assoc 2013;20(2):332-41. doi:10.1136/amiajnl-2012-001117.
CCI Members: David Hanauer
Choi SW, Chang L, Hanauer DA, Shaffer-Hartman J, Teitelbaum D, Lewis I, Blackwood A, Akcasu N, Steel J, Christensen J, Niedner MF. Rapid reduction of central line infections in hospitalized pediatric oncology patients through simple quality improvement methods. Pediatr Blood Cancer 2013;60(2):262-9. doi:10.1002/pbc.24187.
CCI Members: David Hanauer
Eliassen AM, Hauff SJ, Tang AL, Thomas DH, McHugh JB, Walline HM, Stoerker J, Maxwell JH, Worden FP, Eisbruch A, Czerwinski MJ, Papagerakis SM, Chepeha DB, Bradford CR, Hanauer DA, Carey TE, Prince ME. Head and neck squamous cell carcinoma in pregnant women. Head Neck 2013;35(3):335-42. doi:10.1002/hed.22973.
CCI Members: David Hanauer
Hanauer DA, Mei Q, Malin B, Zheng K. Location bias of identifiers in clinical narratives. AMIA Annu Symp Proc 2013;2013:560-9.
CCI Members: David Hanauer

2012

Zampi JD, Donohue JE, Charpie JR, Yu S, Hanauer DA, Hirsch JC. Retrospective database research in pediatric cardiology and congenital heart surgery: an illustrative example of limitations and possible solutions. World J Pediatr Congenit Heart Surg 2012;3(3):283-7. doi:10.1177/2150135112440462.
CCI Members: David Hanauer
Hanauer DA, Liu Y, Mei Q, Manion FJ, Balis UJ, Zheng K. Hedging their mets: the use of uncertainty terms in clinical documents and its potential implications when sharing the documents with patients. AMIA Annu Symp Proc 2012;2012:321-30.
CCI Members: Frank Manion, David Hanauer
Manion FJ, Harris MR, Buyuktur AG, Clark PM, An LC, Hanauer DA. Leveraging EHR data for outcomes and comparative effectiveness research in oncology. Curr Oncol Rep 2012;14(6):494-501. doi:10.1007/s11912-012-0272-6.
CCI Members: Frank Manion, David Hanauer
Zampi JD, Hirsch JC, Gurney JG, Donohue JE, Yu S, LaPage MJ, Hanauer DA, Charpie JR. Junctional ectopic tachycardia after infant heart surgery: incidence and outcomes. Pediatr Cardiol 2012;33(8):1362-9. doi:10.1007/s00246-012-0348-y.
CCI Members: David Hanauer
Choi SW, Stiff P, Cooke K, Ferrara JLM, Braun T, Kitko C, Reddy P, Yanik G, Mineishi S, Paczesny S, Hanauer DA, Pawarode A, Peres E, Rodriguez T, Smith S, Levine JE. TNF-inhibition with etanercept for graft-versus-host disease prevention in high-risk HCT: lower TNFR1 levels correlate with better outcomes. Biol Blood Marrow Transplant 2012;18(10):1525-32. doi:10.1016/j.bbmt.2012.03.013.
CCI Members: David Hanauer
Dombkowski KJ, Harrington L, Hanauer DA, Kennedy A, Clark S. Current and potential use of new technologies for reminder notifications. Clin Pediatr (Phila) 2012;51(4):394-7. doi:10.1177/0009922811420715.
CCI Members: David Hanauer

2011

Yang L, Mei Q, Zheng K, Hanauer DA. Query log analysis of an electronic health record search engine. AMIA Annu Symp Proc 2011;2011:915-24.
CCI Members: David Hanauer
Zheng K, Hanauer DA, Padman R, Johnson MP, Hussain AA, Ye W, Zhou X, Diamond HS. Handling anticipated exceptions in clinical care: investigating clinician use of 'exit strategies' in an electronic health records system. J Am Med Inform Assoc 2011;18(6):883-9. doi:10.1136/amiajnl-2011-000118.
CCI Members: David Hanauer
Zheng K, Guo MH, Hanauer DA. Using the time and motion method to study clinical work processes and workflow: methodological inconsistencies and a call for standardized research. J Am Med Inform Assoc 2011;18(5):704-10. doi:10.1136/amiajnl-2011-000083.
CCI Members: David Hanauer
Zheng K, Mei Q, Hanauer DA. Collaborative search in electronic health records. J Am Med Inform Assoc 2011;18(3):282-91. doi:10.1136/amiajnl-2011-000009.
CCI Members: David Hanauer
Zheng K, Mei Q, Yang L, Manion FJ, Balis UJ, Hanauer DA. Voice-dictated versus typed-in clinician notes: linguistic properties and the potential implications on natural language processing. AMIA Annu Symp Proc 2011;2011:1630-8.
CCI Members: Frank Manion, David Hanauer
Meropol NJ, Daly MB, Vig HS, Manion FJ, Manne SL, Mazar C, Murphy C, Solarino N, Zubarev V. Delivery of Internet-based cancer genetic counselling services to patients' homes: a feasibility study. J Telemed Telecare 2011;17(1):36-40. doi:10.1258/jtt.2010.100116.
CCI Members: Frank Manion

2010

Aberdeen J, Bayer S, Yeniterzi R, Wellner B, Clark C, Hanauer DA, Malin B, Hirschman L. The MITRE Identification Scrubber Toolkit: design, training, and assessment. Int J Med Inform 2010;79(12):849-59. doi:10.1016/j.ijmedinf.2010.09.007.
CCI Members: David Hanauer
Zheng K, Haftel HM, Hirschl RB, O'Reilly M, Hanauer DA. Quantifying the impact of health IT implementations on clinical workflow: a new methodological perspective. J Am Med Inform Assoc 2010;17(4):454-61. doi:10.1136/jamia.2010.004440.
CCI Members: David Hanauer
Paczesny S, Braun TM, Levine JE, Hogan J, Crawford J, Coffing B, Olsen S, Choi SW, Wang H, Faca V, Pitteri S, Zhang Q, Chin A, Kitko C, Mineishi S, Yanik G, Peres E, Hanauer DA, Wang Y, Reddy P, Hanash S, Ferrara JLM. Elafin is a biomarker of graft-versus-host disease of the skin. Sci Transl Med 2010;2(13):13ra2. doi:10.1126/scitranslmed.3000406.
CCI Members: David Hanauer
Paczesny S, Hanauer DA, Sun Y, Reddy P. New perspectives on the biology of acute GVHD. Bone Marrow Transplant 2010;45(1):1-11. doi:10.1038/bmt.2009.328.
CCI Members: David Hanauer
Gillespie EF, Sorbero ME, Hanauer DA, Sabel MS, Herrmann EJ, Weiser LJ, Jagielski CH, Griggs JJ. Obesity and angiolymphatic invasion in primary breast cancer. Ann Surg Oncol 2010;17(3):752-9. doi:10.1245/s10434-009-0797-6.
CCI Members: David Hanauer

2009

Hanauer DA, Wentzell K, Laffel N, Laffel LM. Computerized Automated Reminder Diabetes System (CARDS): e-mail and SMS cell phone text messaging reminders to support diabetes management. Diabetes Technol Ther 2009;11(2):99-106. doi:10.1089/dia.2008.0022.
CCI Members: David Hanauer
Seyfried L, Hanauer DA, Nease D, Albeiruti R, Kavanagh J, Kales HC. Enhanced identification of eligibility for depression research using an electronic medical record search engine. Int J Med Inform 2009;78(12):e13-8. doi:10.1016/j.ijmedinf.2009.05.002.
CCI Members: David Hanauer
Blayney DW, McNiff K, Hanauer DA, Miela G, Markstrom D, Neuss M. Implementation of the Quality Oncology Practice Initiative at a university comprehensive cancer center. J Clin Oncol 2009;27(23):3802-7. doi:10.1200/JCO.2008.21.6770.
CCI Members: David Hanauer
Hanauer DA, Rhodes DR, Chinnaiyan AM. Exploring clinical associations using '-omics' based enrichment analyses. PLoS One 2009;4(4):e5203. doi:10.1371/journal.pone.0005203.
CCI Members: David Hanauer
Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly R-P, Brinkman RR. FuGEFlow: data model and markup language for flow cytometry. BMC Bioinformatics 2009;10:184. doi:10.1186/1471-2105-10-184.
CCI Members: Frank Manion
Hanauer DA, Englesbe MJ, Cowan JA, Campbell DA. Informatics and the American College of Surgeons National Surgical Quality Improvement Program: automated processes could replace manual record review. J Am Coll Surg 2009;208(1):37-41. doi:10.1016/j.jamcollsurg.2008.08.030.
CCI Members: David Hanauer
Manion FJ, Robbins RJ, Weems WA, Crowley RS. Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study. BMC Med Inform Decis Mak 2009;9:31. doi:10.1186/1472-6947-9-31.
CCI Members: Frank Manion
Min H, Manion FJ, Goralczyk E, Wong Y-N, Ross E, J Beck R. Integration of prostate cancer clinical data using an ontology. J Biomed Inform 2009;42(6):1035-45. doi:10.1016/j.jbi.2009.05.007.
CCI Members: Frank Manion

2007

Hanauer DA, Rhodes DR, Sinha-Kumar C, Chinnaiyan AM. Bioinformatics approaches in the study of cancer. Curr Mol Med 2007;7(1):133-41.
CCI Members: David Hanauer
Hanauer DA, Miela G, Chinnaiyan AM, Chang AE, Blayney DW. The registry case finding engine: an automated tool to identify cancer cases from unstructured, free-text pathology reports and clinical notes. J Am Coll Surg 2007;205(5):690-7. doi:10.1016/j.jamcollsurg.2007.05.014.
CCI Members: David Hanauer
Choi SW, Hildebrandt GC, Olkiewicz KM, Hanauer DA, Chaudhary MN, Silva IA, Rogers CE, Deurloo DT, Fisher JM, Liu C, Adams D, Chensue SW, Cooke KR. CCR1/CCL5 (RANTES) receptor-ligand interactions modulate allogeneic T-cell responses and graft-versus-host disease following stem-cell transplantation. Blood 2007;110(9):3447-55. doi:10.1182/blood-2007-05-087403.
CCI Members: David Hanauer

2006

Bidaut G, Manion FJ, Garcia C, Ochs MF. WaveRead: automatic measurement of relative gene expression levels from microarrays using wavelet analysis. J Biomed Inform 2006;39(4):379-88. doi:10.1016/j.jbi.2005.10.001.
CCI Members: Frank Manion
CCI Members: David Hanauer
Hanauer DA, Wentzell K, Tovar A, Zeuhlke J, Kumar V, Laffel LMB. Parent and youth assessments of a handheld wireless device to enhance diabetes mellitus management. Arch Pediatr Adolesc Med 2006;160(3):321. doi:10.1001/archpedi.160.3.321-a.
CCI Members: David Hanauer

2004

Grant JD, Somers LA, Zhang Y, Manion FJ, Bidaut G, Ochs MF. FGDP: functional genomics data pipeline for automated, multiple microarray data analyses. Bioinformatics 2004;20(2):282-3.
CCI Members: Frank Manion
Hanauer DA. Disaster recovery for electronic data: are you prepared?. J Med Pract Manage 2004;20(2):82-7.
CCI Members: David Hanauer
CCI Members: David Hanauer
Hanauer DA, Dibble E, Fortin J, Col NF. Internet use among community college students: implications in designing healthcare interventions. J Am Coll Health 2004;52(5):197-202. doi:10.3200/JACH.52.5.197-202.
CCI Members: David Hanauer

2003

Kossenkov A, Manion FJ, Korotkov E, Moloshok TD, Ochs MF. ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database. Bioinformatics 2003;19(5):675-6.
CCI Members: Frank Manion

2002

Grant JD, Dunbrack RL, Manion FJ, Ochs MF. BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster. Bioinformatics 2002;18(5):765-6.
CCI Members: Frank Manion
Moloshok TD, Klevecz RR, Grant JD, Manion FJ, Speier WF, Ochs MF. Application of Bayesian decomposition for analysing microarray data. Bioinformatics 2002;18(4):566-75.
CCI Members: Frank Manion
Hanauer DA, Argilla M, Wallerstein R. Rubinstein-Taybi syndrome and hypoplastic left heart. Am J Med Genet 2002;112(1):109-11. doi:10.1002/ajmg.10617.
CCI Members: David Hanauer

2001

Grant JD, Broccoli D, Muquit M, Manion FJ, Tisdall J, Ochs MF. Telometric: a tool providing simplified, reproducible measurements of telomeric DNA from constant field agarose gels. Biotechniques 2001;31(6):1314-6, 1318.
CCI Members: Frank Manion
University of Michigan Comprehensive Cancer Center at North Campus Reserach Complex
1600 Huron Parkway, Bldg 100, Rm 100 
Mailing Address: 2800 Plymouth Rd, NCRC 100-1004
Ann Arbor, MI 48109-2800 
Ph. (734) 764-8848 Fax. (734) 615-0517
Please acknowledge the Cancer Center Support Grant (P30 CA046592) when publishing manuscripts or abstracts that utilized the services of the University of Michigan's Comprehensive Cancer Center's Shared Resource: Cancer Informatics.
Suggested language: "Research reported in this [publication/press release] was supported by the National Cancer Institute of the National Institutes of Health under award number P30CA046592."

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